Introduction
7
2.1
Methods offered by CAP
Data set statistics
30
Species correlations
54
Data transformations
39
Changing the data to relative magnitudes
41
Dealing with zeros
39
Transposing data
42
Analysis of Similarity   ANOSIM 
48
Similarity percentages  SIMPER
49
Principal Components Analysis  PCA
53
Non Metric Multidimensional scaling
58
Reciprocal Averaging RA
67
Detrended Correspondence Analysis DECORANA
64
Two way indicator species analysis TWINSPAN
70
Agglomerative cluster analysis
75
Divisive cluster analysis
80
Similarity measures
82
Association analysis
96
Experimental methods:
Species Filtering
98
2.2
Installation
System requirements
:
1. A PC running Windows 95 or later
2. 10 MB of spare hard disk space
3. SVGA screen running at minimum 256 colours.
CAP does not limit the size of your data set, however your hardware will. To
use CAP with very large data sets (1000 or more species or samples) you will
need a fast modern machine with 256 MB memory or more.
Installation
:
1. Place the CAP CD in your CD drive: the installation process should begin
automatically   follow the on screen instructions.
2. If the CD does not auto play, browse the CD in Windows Explorer or My
Documents and click file named Setup.exe in the root directory.
    3.
When installation is complete, there will be a CAP entry under Start:
Programs. An uninstall facility will also be created, in case you wish to
remove the program.
Copyright 2004, PISCES CONSERVATION LTD





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